To calculate the fluid-structure interaction(FSI) problem rationally, it should be the basic technology to analyse each domain of fluid and structure accurately. In this paper, a new FSI analysis algorithm was introduced using the 3D solid finite element for structural analysis and CFD code based on the HCIB method for viscous flow analysis. The fluid and structural domain were analysed successively and alternatively in time domain. The structural domain was analysed by the Newmark-b direct time integration scheme using the pressure field calculated by the CFD code. The results for example calculation were compared with other research and it was shown that those coincided each other. So we can conclude that the developed algorithm can be applied to the general FSI problems.