The structural health monitoring has been gaining more importance in civil engineering areas such as earthquake and wind engineering. The use of health monitoring system can also provide tools for the validation of structural analytical model. However, only few structures such as historical buildings and some important long bridges have been instrumented with structural monitoring system due to high cost of installation, long and complicated installation of system wires. In this paper, the structural monitoring system based on cheap and wireless monitoring system is investigated. The use of advanced technology of micro-electro-mechanical system(MEMS) and wireless communication can reduce system cost and simplify the installation. Further the application of wireless MEMS system can provide enhanced system functionality and due to low noise densities. Identification results are compared to ones using data measured from traditional accelerometers and results indicate that the system identification using wireless MEMS system estimates system parameters accurately.