This paper presents a cooling system using thermoelectron for improving the output of BIPV module. The temperature characteristic in regard to improving the output of BIPV system has rarely been studied up to now but some researchers only presented the method using a ventilator. The cooling system efficiency of BIPV module applied to a ventilator mainly depends on the weather such as wind, insolation etc. Because the cooling system of BIPV module using a ventilator is so sensitive, that is being set off by wind speed at all time but is unable to operate in the NOCT(Nominal Operating Cell Temperature) which is able to make the maximum output. The paper presents the cooling system using thermoelectron so as to solve such problems. The temperature control of thermoelectron can be controlled independently in the outside environment because that is performed by micro-controller. The temperature control of thermoelectron, also, can be operated around NOCT through algorism of the temperature control. Therefore, outputs of the whole system increase and the efficiency rises. The paper demonstrates the validity of proposed method by comparing the data obtained through a experiment of the cooling method of BIPV using a ventilator and proposed thermoelectron.