A number of fallow paddies field continues to increase because of adverse agricultural circumstance such as upsurge income of foreign products, increase of labor costs in local community, imbalance between productivity and profitability etc. Such fallow paddies are necessary to be protected against weeds and trees. If fallow paddies are not managed, it will be devastated and needed cost for re-cultivation. Therefore, management of gradually increased fallow paddy fields should be conducted. In this study, the effect of plants growth inhibition and water quality purification through the control of flood in fallow paddy were examined in an experimental field. The managed and unmanaged fallow paddies through the control of water depth were constructed in the experimental field. The monitoring was conducted from 2005 to 2007. As the result, the managed fallow paddies were more effective than the unmanaged ones on the growth inhibition and water purification. In addition, when the fallow paddy is managed with regular water depth, it was the most effective in the plants growth inhibition.