As power facilities are getting higher at capacity, the monitoring and diagnosis of generators for fault detection and protection has attracted intensive interest. In case of an after-fault in high capacity rotating machines, the recovering cost is usually very expensive and additional time is necessary for returning in a normal situation. In this paper, we developed the protection program for the generator fault protection system and each module of the digital protective relay H/W for loading the protection program. The protective relay H/W was designed to have EMC characteristics for prohibiting from fault operation in bad power systems.