This paper proposes a change management system of sensor network applications based on version synchronization that supports to effectively manage defect correction of applications, change of functions for applications or improvement of applications without suspending the sensor network. The proposed change management system consists of the NADE which is an application development environment, the Node Management Server, and the Node Agent. NADE is an Eclipse-based development environment for developing applications which are installed into nodes. NADE is also connected with CVSNT which is a version management tool and performs application version management using the CVSNT. Node Management Server manages nodes to maintain latest versions of applications by synchronizing versions of applications which are performed on the nodes with the versions of applications which are developed in the NADE. Node Agent which is loaded into the node periodically sends the version information of the application to the server, and stores and updates the version information of the application. Through the proposed change management system, applications of nodes are automatically updated when versions of applications are changed by correcting defects, changing functions or improving applications. Therefore, the user can effectively manage the execution of sensor network system without suspending or delaying the sensor network. Also, visibility of change management for sensor network applications will be improved.