RC flat plate, which has no large flexural stiffness by boundary beams, may be governed by serviceability as well as strength condition. A construction sequence and its impact on distributions of construction loads among slabs tied by shores are decisive factors on immediate and long term performances of flat plate. The over-loading and tensile cracking in early-aged slabs significantly increase the deflection of flat plate system. In this study, for slab deflections, the practical analysis scheme using a linear analysis program is formulated with considering construction sequence and concrete cracking effects. The concept of the effective moment of inertia in calculating deflections of one-way bending member, that is presented in structural design codes, is extended to the finite element analysis of the two-way slab system of flat plates. Effects of over-loads during construction on deflections of flat plate system are analyzed by applying the proposed practical analysis scheme into the critical construction load conditions calculated from the simplified method.