The changes of geomagnetic flux density distribution on the ground surface by underground empty spaces had been investigated through the variations of the soil density and measuring heights. The geomagnetic flux density distributions were monitored for the surfaces of different density, sink-hole and tunnel by fluxgate-type magnetometer. The underground empty space and low soil density decreased the geomagnetic flux densities, which were decreased from the boundary of raw and low-density (empty) grounds, and showed the lowest value at the center of low-density (empty) ground. The decreases of geomagnetic flux density by underground empty spaces could be found at the surface with the tunnel located at 80 m underground. And, the underground defects of empty spaces, low density zone, fracture zone and sink holes could be monitored by the phenomena of this decreasing flux density.