Objectives: To identify factors affecting the health of male professional soldiers. Methods: Cross-sectional questionnaire data was collected from a randomly stratified sample population of 763 officers and sergeants who were employed in 34 units in the Korean military. Data were statistically analyzed using Chi-square test and multiple logistic regression analysis. Results: Work environment and personal health behavior were influential factors, which were differentiated by recent disease history including cardiovascular disease and self-rated health status. Sergeants in special forces/units or engaged in front-line military activities, and soldiers who were current smokers and heavy drinkers were more likely to have been diagnosed with a disease in the preceding three months. Those who were older, obese, and heavy drinkers were more likely to have cardiovascular disease than those who were less obese and more physical active. Soldiers exhibiting signs of extreme stress were more likely to poorly self-rate their health status. Conclusion: Health behaviors and characteristics of work environment significantly influence the health status among Korean professional soldiers. Health promotion strategies are needed to change individual heath behaviors such as smoking, alcohol consumption, and work stress. A healthier working environment should also be promoted.