This paper presents a novel method which can detect a target in IR image for active protection system. The target in IR image for the active protection system is small, moreover it moves with enormous speed. The proposed algorithm is comprised of robust clutter rejection methods and target optimized detection algorithms for small target, and an advanced method of selecting a final target position in target area, it can work in some milliseconds. The proposed algorithm provides the active protective system with more correct positions than those of radar, so that helps the active protection system can defense all threats with the utmost precision.