Due to the measurement noise or system noise, the performance of photovoltaic power generation system can be degraded. If this noise is contained in the solar array voltage measurement signal, the correct operation of the maximum power point tracker can not be guaranteed. The application of the extended Kalman filter to the photovoltaic system can obtain enhanced states estimation result. The Kalman filter provides a recursive solution to optimally estimate from random noise signals. Additionally, as a consequence of Kalman filter, the unmeasurable state such as inductor current can be estimated without current sensor. The methods for system modeling and extended Kalman filter design are presented and the experimental results verify the validity of the proposed system.