The discharge within the basin in Jeju Island was calculated by using SWAT model, which a Semi-distributed rainfall-runoff model to the important rivers. The basin of Chunmi river of the eastern region of Jeju Island, as the result of correcting as utilizing direct runoff data of 2 surveys, appeared the similar value to the existing basin average runoff rate as 22% of average direct runoff rate for the applied period. The basin of Oaedo river of the northern region showed $R^2$ of 0.93, RMSE of 14.92 and ME of 0.70 as the result of correcting as utilizing runoff data in the occurrence of 7 rainfalls. The basin of Ongpo river of the western region showed $R^2$ of 0.86, RMSE of 0.62 and ME of 0.56 as the result of correcting as utilizing runoff data except for the period of flood in $2002{sim}2003$. Yeonoae river of the southern region showed $R^2$ of 0.85, RMSE of 0.99 and ME of 0.83 as the result of correcting as utilizing runoff data of 2003. As the result of calculating runoff for the long term about 4 basins of Jeju Island from the above results, SWAT model wholly appears the excellent results about the long-term daily runoff simulation.