Recently, the large capacity draft fans in power plants had been changed to variable speed type to educe the power consumption. But the fan experienced the unexpected vibration at specific speed regions. In this study, the high vibration frequency of the fan was confirmed and the natural frequency of the rotor were measured and analyzed by FEM programs. It was analyzed that the vibration was caused by the resonance at the frequency, 30.7Hz. So, the rotor vibration characteristic was changed by adjusting the distance between the shaft bearings. It was conformed the high vibration was disappeared over the all operation speeds.