In this study, a modeling process of a 3-axis planar alignment stage is suggested. Vibration tests using a laser vibro-meter is performed to find the modeling parameters of the stage. By analyzing the result of the test, the stiffness of prismatic joints and revolute joints, as well as the contact conditions of the thrust bearings, can be calculated. The modeling of the stage was validated by comparing six normal mode shapes, which are acquired from experiments and simulations.