This study describes the three-dimensional behavior of pile foundations based on a numerical study. A series of numerical analyses were performed for connectivity conditions between piles and cap under vertical and lateral loadings. It is shown that a fixed connection between pile and cap is able to transfer significant bending moment through the connection and increases the pile lateral stiffness and the bending moment. Based on the results obtained, it was found that the cross sectional shear force in the raft with fixed head condition was larger than that of pinned head condition. Thus, the reinforcement of pile head and thickness of the raft also increases in fixed pile head condition. From the results, it is found that the overall behavior and cross sectional forces of pile foundations is affected significantly by the pile head conditions. Furthermore, the design of pile foundations with pinned head condition was judged to be less costly and very useful for preliminary design stages.