In Strapdown Inertial Navigation System, alignment accuracy is the most important factor to determine the performance of navigation. However by an existing self-alignment method, it takes a long time to acquire the alignment accuracy that we want. So, to attain the desired alignment accuracy in as little as $igcirc$ minutes, we have developed the precise multi-position alignment method. In this paper, it is proposed a inertial measurement matching transfer alignment method among alignment methods to minimize the alignment error in a short time. It is based on a mixed velocity-DCM matching method be suitable to the operating environment of vertical launching system. The compensation methods to reduce misalign error, especially azimuth angle error incurred by measurement time-delay error and body flexure error are analyzed and evaluated with simulation. This simulation results are finally confirmed by experimentations using FMS(Flight Motion Simulator) in Lab and the integration test to follow the fire control mission.