Objectives: In this study, diagnosis of an ontology-based electronic chart system works by presenting a model electronic chart system is contributing to the standardization and objectification in Oriental Medicine field. Methods: The clinic is currently used in the electronic chart, and use surveys and research utilization was diagnosed. In addition, the symptoms with medicines, prescriptions, patterns ontology data, information, relationships between the association was derived. electronic chart the flow of information from the input data stream was defined using the ontology. Medicines, prescriptions, patterns diagnosis ontology, using the process model presented in the electronic chart. Results: This study show that interoperable model within the diagnostic capabilities of the electronic chart system in Oriental Medicine and represent diagnosis process in the system with symptoms. Conclusions: Diagnosed with symptoms of ontology integration with electronic chart to study the model was placed goal. Diagnosis and prescription due to strong associative connection implies an ontology can be seen even more important. Diagnostic elements will be added to enhance the diagnostic capabilities in the electronic chart can be varied and objective diagnostic model can be presented. This study extends the range for the CDSS, and new areas of research can be presented.