In this paper, parallel programming technique by using Java Thread is introduced so as to develop parallel design tool to analyze the small micro flow sensor. To estimate computing time for Thread-level parallelism, the performances of two experimental models for potential problem subject to Thermal transfer equation are examined. As a result, if the number of network PC is increase, computing time for parallelism on network environment is enhanced to be almost n times. The micro sensor design tool based on distributed computing can be utilized to analyze a large scale problem.