Cochlodinium polykrikoides has occurs regularly during the summer in the South Sea of Korea. To investigate photosynthetic pigments concerned with phytoplankton community structure as bloom of Cochlodinium polykrikoides, the experiment was sampled at 20 stations three times between July and September 2002 in the Southern Sea of Korea. The distribution of peridinin, the biomarker of dinoflagellate, was higher at the blooming time than it was before and it disappeared after bloom. The correlative coefficients between Chl. a and peridinin at the blooming time and out of bloom were 0.9253 and 0.1613, respectively. This result indicated that the bloom was caused by dinoflagellate. The correlative coefficients between Chl. a and fucoxanthin were 0.3282 and 0.9759, respectively, and the correlative coefficients showed the succession from dinoflagellate to diatom. This result means that the bloom of Cochlodinium polykrikoides can be detected by Chl. a information from satellite remote sensing. Therefore, if the algorithm to detect peridinin in addition to Chl. a were to be developed, dinoflagellate red tide could be monitored more effectively.