While a caisson used for breakwater is carried by a floating dock, accompanying stability problem by its existing motions in the dock is quite important and should be pre-checked against sea environmental condition. In the stability analysis, the acceleration, velocity, angle of roll and pitch motions are important to calculate frictional force and separation force. If separation force becomes bigger than frictional force, serious collision may be occurred between caisson and floating dock. In this study, stability evaluation during the transportation of a caisson on floating dock for breakwater was performed by using a commercial program, HydroD and CHARM3D/HARP.