This study was carried out to compare the performances of hydrophobic and hydrophilic membranes in the filtration of the pretreatment waters using coagulants such as PAC and PAHCs, and to investigate the influence of NOM characteristics on the fouling of membranes. As a result, the hydrophobic fraction was more effectively removed by PAHCs, however the transphilic and hydrophilic fraction were more effectively removed by PAC on NOM removal. Raw water showed the highest response in the range of humic substances, and pre-coagulated waters with PAC and PAHCs followed. It was also observed that the fouling effect for a hydrophobic membrane was greater than that of a hydrophilic membrane with a similar pore size, due to fouling caused by adsorption. Foulants causing significant flux decline were alcoholic compounds (polysaccharide-like) and humic substances including aromatic groups. Especially, it appeared that alcoholic compounds such as polysaccharide-like substances which mostly remained after coagulation pretreatment had most influence on fouling. It was found that fouling were influenced by each fraction NOM components depending on coagulants used. And PAHCs was more efficient for membrane fouling than PAC.