A three-phase three-level shunt active filter controlled by fuzzy logic current controller which can compensate current harmonics generated by nonlinear loads is presented. Three-level inverters and fuzzy controllers have been successfully employed in several power electronic applications these past years. To improve the conventional pwm controller performance, a new control scheme based on fuzzy current controller is adopted for three-level (NPC) shunt active filter. The scheme is designed to improve compensation capability of APF by adjusting the current error using a fuzzy rule. The inverter current reference signals required to compensate harmonic currents use the synchronous reference detection method. This technique is easy to implement and achieves good results. To maintain the dc voltage across capacitor constant and reduce inverter losses, a proportional integral voltage controller is used. The simulation of global system control and power circuits is performed using Matlab-Simulink and SimPowerSystem toolbox. The results obtained in transient and steady states under various operating conditions show the effectiveness of the proposed shunt active filter based on fuzzy current controller compared to the conventional scheme.