A computational model is developed to analyze the effects of magnetic field in a pulsatile flow of blood through narrow arteries with mild stenosis, treating blood as Casson fluid model. Finite difference method is employed to solve the simplified nonlinear partial differential equation and an explicit finite difference scheme is obtained for velocity and subsequently the finite difference formula for the now rate, skin friction and longitudinal impedance are also derived. The effects of various parameters associated with this flow problem such as stenosis height, yield stress, magnetic field and amplitude of the pressure gradient on the physiologically important flow quantities namely velocity distribution, flow rate, skin friction and longitudinal impedance to flow are analyzed by plotting the graphs for the variation of these flow quantities for different values of the aforesaid parameters. It is found that the velocity and flow rate decrease with the increase of the Hartmann number and the reverse behavior is noticed for the wall shear stress and longitudinal impedance of the flow. It is noted that flow rate increases and skin friction decreases with the increase of the pressure gradient. It is also observed that the skin friction and longitudinal impedance increase with the increase of the amplitude parameter of the artery radius. It is also found that the skin friction and longitudinal impedance increases with the increase of the stenosis depth. It is recorded that the estimates of the increase in the skin friction and longitudinal impedance to flow increase considerably with the increase of the Hartmann number.