This paper presents an algorithm that conducts automatic memory scrubbing operated by dedicated hardwares. The proposed algorithm is designed so that it can scrub entire memory in a given scrub period, while minimally affecting the execution of flight softwares. The scrub controller is constructed in a form of state machines, which have two execution modes - normal mode and burst mode. The deadline event generator and period tick generator are designed in a separate way to support the behavior of the scrub controller. The proposed controller is implemented in VHDL code to validate its applicability. A simple version of the controller is also applied to mass memory modules used in STSAT-3.