A comparison study between two performance testing results, one is on the site calibration not needed and the other is needed, was proceeded for the understanding on the effect of site calibration on the complex terrain. As a result, it is revealed that all of uncertainty components is effected by the topographical features dramatically. And the maximum difference of uncertainty reached at around 8% of rated capacity of wind turbine. So, the site calibration is an effective method to remove the variable wind effect by the ground complexity and must be proceeded before the power performance testing of a wind turbine.