We are carried out power performance testing for 3MW wind turbine system at Je-ju wind turbine testing Site and analyzed measured data which was stored through monitoring system. In this paper, we described the power performance testing results and analyzed an uncertainty of measured data sets. The power curve with measured power data is closely coincide with designed power curve except for the low wind speed sections(4m/s~7m/s) and the annual energy production which is given Ray leigh distribution was included with 1.5~5.9% of uncertainty in the wind speed region as 4~11m/s. Although the deviation of curve between measured power and designed power is high, the difference of annual energy production is low in the low wind speed region.