This study deals with an integrated problem for deciding sequencing and storage location of export containers together at its receiving operation in the container terminal with a perpendicular layout. The preferred storage location of an export container varies with the priority of the corresponding loading operation and the waiting time of an external truck depends on its storage time. This paper proposes the mixed integer programming model considering the expected arrival time and expected finish time of an external truck and the preferred storage location for its loading operation. And we suggest the heuristic algorithm based on a simulated annealing algorithm for real world adaption. We compare the heuristic algorithm with the optimum model in terms of the computation times and total cost and the performance of the heuristic algorithm is analyzed through a numerical experiment.