In recently, sky-bridge are often applied to high-rised adjacent buildings for pedestrian bridge. the seisnic response control of adjacent buildings have been studied and magneto-rheological(MR) fluid dampers have been applied to seismic response control. In this study, vibration control effect of the MR damper connected adjacent buildings has been investigated. Adjacent building structures with different natural frequencies were used as example structures. Two typed of control methods, displacement based or velocity based, are applied to determinate control force of MR damper. In this numerical analysis, it has been shown that displacement-based control algorithm is more effective than velocity-based control algorithm for seismic response control of adjacent buildings. And, when displacement-based control method is applied to control of adjacent buildings, the control of building occurred large displacement is more efficient in reducing the seismic response.