This paper is about the system to process XML-based EDI e-document. This system does not use the script file when translating EDI e-document into the XML-based EDI-document. We design and implement the scanner and mapper which are the e-document processors with binary format used when reading and writing the documents. Also, we design and implement the mapping tools that graphically define the translation rules among e-documents. Therefore, the proposed XML-based EDI e-document processing system has characteristics advantages of XML and more benefits than the previous EDI e-document processing system such as faster speed, convenience, and better adaptability. Due to these advantages, this system will be widely used as the B2B gateway system.