In this paper, we report a case study on the common due-date assignment and scheduling problem in a paper remanufacturing system that produces corrugated cardboards using collected waste papers for a given set of orders under the make-to-order (MTO) environment. Since the system produces corrugated cardboards in an integrated process and has sequence-dependent setups, the problem considered here can be regarded as common due-date assignment and sequencing on a single machine with sequence-dependent setup times. The objective is to minimize the sum of the penalties associated with due-date assignment, earliness, and tardiness. In the study, the earliness and tardiness penalties were obtained from inventory holding and backorder costs, respectively. To solve the problem, we adopted two types of algorithms: (a) branch and bound algorithm that gives the optimal solutions; and (b) heuristic algorithms. Computational experiments were done on the data generated from the case and the results show that both types of algorithms work well for the case data. In particular, the branch and bound algorithm gave the optimal solutions quickly. However, it is recommended to use the heuristic algorithms for large-sized instances, especially when the solution time is very critical.