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전장 유전체 관련성 분석을 통한 한우 도체수율 관련 양적형질좌위 탐색
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  • 전장 유전체 관련성 분석을 통한 한우 도체수율 관련 양적형질좌위 탐색
저자명
이승환,임다정,당창권,장선식,김형철,전기준,연성흠,장길원,박응우,오재돈,이학교,이준헌,강희설,윤두학,Lee. Seung Hwan,Lim. Dajeong,Dang. Chang Gwan,Chang. Sun Sik,Kim. Hyeong
간행물명
농업과학연구
권/호정보
2013년|40권 2호|pp.155-162 (8 pages)
발행정보
충남대학교 농업과학연구소
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
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기타언어초록

Genome-wide association study was performed on data from 266 Hanwoo steers derived from 66 sire using bovine 10K mapping chip in Hanwoo (Korean Cattle). SNPs were excluded from the analysis if they failed in over 5% of the genotypes, had median GC scores below 0.6, had GC scores under 0.6 in less than 90% of the samples, deviated in heterozygosity more than 3 standard deviations from the other SNPs and were out of Hardy-Weinberg equilibrium for a cutoff p-value of $1^{-15}$. Unmapped and SNPs on sex chromosomes were also excluded. A total of 4,522 SNPs were included in the analysis. To test an association between SNP and QTL, GWAS for five genetic mode (additive, dominant, overdominant, recessive and codominant) was implemented in this study. Three SNPs (rs29018694, ss46526851 and rs29018222) at a threshold p< $1.11{ imes}10^{-5}$ were detected on BTA12 and BTA21 for dressing percentages in codominant and recessive genetic mode. The G allele for rs29018694 has 4.9% higher dressing percentage than A allele, while the T allele for ss46526851 has 2.57 % higher dressing percentage than C allele. Therefore, rs29018694 SNP showed a bigger effect than the other two SNPs (ss46526851 and rs29018222) in this study. In conclusion, this study identifies three loci with moderate effects and many loci with infinitesimally small effect across genome in Hanwoo.