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Development of SCAR Markers for the Identification of Phytophthora katsurae Causing Chestnut Ink Disease in Korea
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  • Development of SCAR Markers for the Identification of Phytophthora katsurae Causing Chestnut Ink Disease in Korea
  • Development of SCAR Markers for the Identification of Phytophthora katsurae Causing Chestnut Ink Disease in Korea
저자명
Lee. Dong Hyeon,Lee. Sun Keun,Lee. Sang Yong,Lee. Jong Kyu
간행물명
Mycobiology
권/호정보
2013년|41권 2호|pp.86-93 (8 pages)
발행정보
한국균학회
파일정보
정기간행물|ENG|
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

Sequence characterized amplified region (SCAR) markers are one of the most effective and accurate tools for microbial identification. In this study, we applied SCAR markers for the rapid and accurate detection of Phytophthora katsurae, the casual agent of chestnut ink disease in Korea. In this study, we developed seven SCAR markers specific to P. katsurae using random amplified polymorphic DNA (RAPD), and assessed the potential of the SCAR markers to serve as tools for identifying P. katsurae. Seven primer pairs (SOPC 1F/SOPC 1R, SOPC 1-1F/SOPC 1-1R, SOPC 3F/SOPC 3R, SOPC 4F/SOPC 4R, SOPC 4F/SOPC 4-1R, SOPD 9F/SOPD 9R, and SOPD 10F/SOPD 10R) from a sequence derived from RAPD fragments were designed for the analysis of the SCAR markers. To evaluate the specificity and sensitivity of the SCAR markers, the genomic DNA of P. katsurae was serially diluted 10-fold to final concentrations from 1 mg/mL to 1 pg/mL. The limit of detection using the SCAR markers ranged from $100{mu}g/mL$ to 100 ng/mL. To identify the limit for detecting P. katsurae zoospores, each suspension of zoospores was serially diluted 10-fold to final concentrations from $10{ imes}10^5$ to $10{ imes}10^1$ zoospores/mL, and then extracted. The limit of detection by SCAR markers was approximately $10{ imes}10^1$ zoospores/mL. PCR detection with SCAR markers was specific for P. katsurae, and did not produce any P. katsurae-specific PCR amplicons from 16 other Phytophthora species used as controls. This study shows that SCAR markers are a useful tool for the rapid and effective detection of P. katsurae.