This study proposes an innovative control approach to suppress the responses of a beam structural system under moving forces. The proposed control algorithm is a synthesis of the adaptive input estimation method (AIEM) and linear quadratic Gaussian (LQG) controller. Using the synthesis algorithm the moving forces can be estimated using AIEM while the LQG controller offers proper control forces to effectively suppress the beam structural system responses. Active control numerical simulations of the beam structural system are performed to evaluate the feasibility and effectiveness of the proposed control technique. The numerical simulation results show that the proposed method has more robust active control performance than the conventional LQG method.