Transportation and further expansion of social infrastructure was needed along the development of urbanization and population concentration. To use the underground space due to the lack of availability of land, it is inevitable to intersect between present structure and tunnel during construction. Soil grouting is one of the ground improvement methods to reinforce weak soil around the underground structures by injection of grouting liquid. Some of central columns of an upper structure are damaged during injection of grouting liquid by injection pressure. To investigate and improve the stability of the tunnel, three dimensional analysis are performed with full construction stages which includes the construction of present underpass, damaging columns of the underpass, reinforcing the columns by H-pile and shear walls, and excavation and construct tunnel. The arrangement of grouting holes such as curtain and horizontal type affects largely to the stability of upper structure and horizontal arrangement diminish the shear forces which is the cause of damage of central columns. The liquid injection type of reinforcement for tunnel is not recommended while the presence of upper structure with columns. Wall type reinforcing is utilize for permant support of upper structures which is affected by grouting injection pressure. H-pile is utilize for temporary support, but not for permanent since the sharing of shear forces is not much to shear wall during tunnel construction.