Recently, due to the excessive use of fossil fuels, many studies about the fossil fuels such as solar and fuel cell energy source are progressing. Fuel cell system has high energy conversion efficiency. Also, fuel cell system is environmentally friendly system because the carbon emission is almost not occur. Therefore, the fuel cell system is considered as the core technology of in the fields of the future energy and environmental. Fuel cell system has an effect on distribution power system because another power source of other than large power plants. So, fuel cell system can be reason of power quality in the power system. In this paper, we constructed the system for an assessment on Islanding. The system is composed with power source, Impedance coordination load and linear load, fuel cell system. we are performed assessment on voltage and power quality in customer and the distributed power system during the Islanding of residential fuel cell system. In addition, no change in the impedance of power system, we made a islanding condition only using the actual load, As a variation of generation and load current under islanding, an analysis results based on assessment system showed that the power qualities of distribution system became more aggravation as effect of voltage sag and voltage swell phenomena.