Busan is located at the mouth of Nakdong River and if an earthquake occurs, it is very likely that the damage by the earthquake will be worse as liquefaction can happen in the sand layer, builtup soil, and landfill ground due to amplification in the lower sedimentary layer that is well developed in the river mouth. Therefore, this study first examined the possibility of liquefaction in the replaced sand layer under breakwater using 14 earthquakes in 5.6-7.9 scale and artificial earthquakes including the seismic wave suggested in the standard specifications for seismic design of ports and fishing port facilities to evaluate the stability of breakwater which is the primary protective structure for port facilities against earthquakes. Second, analysis on characteristics of the seismic energy and acceleration response spectrum by size of earthquake was performed to suggest the most appropriate size of seismic wave for the condition in Korea. Third, finite element analysis was performed using the suggested seismic wave to study the characteristics of earthquake by finding the dynamic lateral displacement of breakwater and verifying the stability of structure and the displacement and forces occurring at geotextile. Results of the study showed that the possibility of liquefaction in the landfill and replaced sand layer, the dynamic lateral displacement of breakwater, and changes of geotextile are greatly affected by the subsurface ground (replaced sand layer).