This study was aimed at investigating a filtration bed system for the production of liquid fertilizer using wastewater generated after anaerobic digestion of animal manure. Slurry, Compost, & Biofiltration-Methane System, designed by Korean National Institute of Animal Science, is now a standard method to recycle anaerobic digestion wastewater. However, currently provided protocol to run the system needs continuous upgrades as the system is relatively new and can be more cost-effective if few adjustments are made. In this study, we tried to enhance the capability of the system to process anaerobic digestion wastewater by replacing the bed materials with the cheaper one, and determining the time point of operation from which filtrates can be utilized for fertilization.