The dynamic behavior of the rectangular liquid storage structure is known to be greatly influenced by fluid-structure interaction. By mounting the liquid storage structure on the properly designed base isolators, dynamic response of the superstructure can be reduced. However, base isolators inevitably incur large displacement of the structure to the ground ·ind may give adverse effects on the sloshing height. This paper presents the analysis method for fluid-structure-isolator interaction in base-isolated rectangular liquid storage structures. In the method, the irrotational motion of invicid and incompressible ideal fluid is expressed by analytic solutions and the superstructure and isolators are properly modeled by finite element and bilinear model. Free surface sloshing motion, hydrodynamic pressure acting on the wall and structural response are obtained by the presented method.