This study investigates the influence of energizing duration on the fuel atomization characteristics of biodiesel injected through a high pressure common-rail injector. In order to analyze the effect of energizing duration on the fuel injection rate performance, the injection rate of biodiesel fuel is obtained from the pressure variation in the tube filled with fuel in injection measuring system. On the other hand, the atomization characteristics of biodiesel was measured and compared in terms of Sauter mean diameter(SMD), arithmetic mean diameter(AMD), droplet mean velocity, and detected droplets number by applying a phase Doppler particle analyzer(PDPA). It was revealed that the injection mass and maximum injection rate increase with increase of the energizing duration. Moreover, the increase of energizing duration improves the atomization performance of biodiesel fuel because it induces higher droplets momentum and velocity.