This case study aims to embody the requirement of the make-to-order type manufacturer who wants to manage risks effectively when decisions are required to be taken under a risk. First, we present a method for choosing the risk factors that should be controlled for the make-to-order type manufacturer. Subsequently, those factors have been verified using statistical methods such as the ANOVA test. The process flows to be operated with the selected risk factors and the rules for an early warning system have been proposed. For a couple of factors, a prototype system has been developed to illustrate actual applications. Applications of the technique developed here for other types of manufacturers might be an interesting research problem.