The relationships between science, technology, and industry are very complicated and vary according to time. Thus, it would be almost impossible to combine the three categories in a single model. However, the linking of science, technology, and industry, which are divided according to their respective classification standards, is a starting point from which to understand how science and technology, technology and industry, and further science, technology, and industry are related to each other. Studies have been carried out to analyze the relationship between science and technology and between technology and industry, whereas no study has been undertaken to get an overall view of science, technology, and industry. Since an appropriate methodology or an analytical model has not been suggested, this paper proposes a model for generally analyzing science, technology, and industry. More specifically, this paper examines the methodology for linking science, technology, and industry. This paper uses citation analysis to analyze knowledge flow such as absorption and utilization of given knowledge, looks at the provision of knowledge to create new knowledge, and examines the use of network analysis to analyze the complicated phenomenon of knowledge flow. This paper proposes an empirical study of trend analysis of technological innovation by looking into a linkage structure of knowledge flow among science, technology, and industry based on the classification linkage and analysis methodology using scientific paper and patents.