Herein, we compared the production rate of UV-absorbing compounds (mycosporine-like amino acids) and carotenoids in two phytoplankton species--Phaeocystis pouchetii and Porosira glacialis--which are the dominant species in Polar Regions under artificial UV radiation conditions. P. pouchetii exposed to UVR and PAR evidenced reductions in the carbon fixation rate, and was not significantly influenced by differing light conditions. However, the concentrations of UV-absorbing compounds and photo-protective pigments of P. pouchetii were increased with increasing exposure time, but P. glacialis maintained constant levels during the UVR exposure experiment. The production rates of MAAs showed a reverse phase between the two phytoplankton species. The carbon fixation rate of P. pouchetii cells was inhibited by exposure to UV radiation, but the production rates of MAAs in P. pouchetii were increased under UV radiation exposure. The carbon fixation rate and production rate of MAAs in P. glacialis were simultaneously inhibited under UV radiation exposure conditions. These results provide us with new information regarding the processes involved in the production of UV-absorbing compounds and photoprotective pigments in two phytoplankton species.