Linear permanent magnet synchronous motors utilize high-energy product permanent magnet to produce high thrust, velocity and acceleration. Such motors are finding applications requiring high positioning accuracy and speed response, for example, machine tools, in the absence of mechanical gears and ball screw systems. A disadvantage of the linear motors is high power loss in comparison with rotary motors. For the application of the linear motors to machine tools, it is required to use water coolers and to improve the thermal behavior through insulation and structure optimization or control strategies. This paper presents the function of the secondary part of the linear synchronous motor as to the thermal behavior and the improving method. The result shows cooling pipe combined with an insulation layer is a suitable design for improving of the thermal behavior.