We documented the temporal occurrence patterns and habitat use of fish in the Mangyeong River estuary on the western coast of Korea from February to December 2003 based on monthly samples collected with a stow net. A total of 46 fish species were collected during the study period. Chelon haematocheilus, Konosirus punctatus, Neosalanx jordani, Sardinella zunasi, Synechogobius hasta, and Thryssa kammalensis were the predominate species, accounting for 84.4% of the collected fish. We classified the fish as brackish water (BF), coastal migratory (CMF), diadromous (DF), or freshwater (FF) fish. BF such as C. haematocheilus, S. hasta, and Coilia nasus were the most abundant and were collected almost year-round. As water temperatures increased in spring, adult CMF, such as K. punctatus, S. zunasi, T. kammalensis, T. adelae, Johnius grypotus, Miichthys miiuy, and Larimichthys polyactis, entered the estuary. In summer, large numbers of their juvenile offspring were caught, indicating a peak in fish abundance. The juveniles grew in the estuary before moving out to deeper waters for overwintering. Diadromous juveniles, such as those of Anguilla japonica (commonly known as glass eel), were collected in the spring during their upstream migration. FF, such as Carassius cuvieri and Acheilognathus rhombeus, were collected during the rainy season. In terms of the number of species, the number of individuals, and the biomass, the ratio of BF to all other fish type classifications in the Mangyeong Estuary (without a dam) was higher than that in the Geum River estuary (with a dam). The fish assemblage in the Mangyeong Estuary still maintained estuarine characteristics before dike enclosure, providing habitats for BF, nursery grounds for CMF, and migratory pathways for DF.