Electrospun meshed poly-caprolactone PCL was patterned by femtosecond laser with linear grooves. As parametric variables, focus spot size, pulse energy, and scanning speed were varied to determine the affects on groove size and the characteristics of the electrospun fiber at the edges of these grooves. The femtosecond laser was seen to be an effective means for flexibly structuring the surface of ES PCL scaffolds and the width of the ablated grooves was well controlled by laser energy and focus spot size. The ablation threshold was measured to be $14.9J/cm^2$ which is a little higher than other polymers. These affects were attributed to optical multiple reflections inside nano-fibers. By the laser-induced plasma at higher pulse energies, some melting of fibers was observed.