Coastal sand dune systems are particularly fragile and threaten the environment. However, these systems provide fundamental ecosystem services to the nearby urban areas, acting, for example, as protective buffers against erosion. In this paper, we attempt to classify the biotope types of coastal sand dune ecosystems and select an index for the assessment of the conservation value. The types of biotopes are categorized based on the vegetation map; floras are examined in order to research the effects of hinterlands on coastal sand dunes. In addition, a naturalization rate and an urbanization index for each biotope type in hinterlands are analyzed. In the ecosystem of coastal sand dunes, the urbanization index and naturalization rate shows a higher value in sand dunes with areas of road, residential, and idle land in farm villages, rice fields, and fields. On the contrary, a lower value in the urbanization index and naturalization rate is present when typical biotope types, such as sand dune vegetation and natural Pinus thunbergii forests, are widely distributed. Based on these results, urbanization index and naturalization rate should be used as critical indices for the assessment of the ecosystem of costal sand dunes.