The interest in wind power generation area such as developing and operating wind-diesel pilot complex in remote and island regions that have difficulty in having power plant and connecting to power system is growing rapidly in the world. We have installed and researched the hybrid system in Sekgok Pilot Complex to meet the new generation system. From the monitored data of the system, the performance of each diesel power plant is outstanding. However, step out problem was detected with respect to load sharing and synchronization with decentralized power supply. An advanced controller design having better response time and stability is needed to solve such problem. In this paper, we proposed the algorithm, through digital controller of Governor, which is applied to hybrid system. As a result, we obtained the stable frequency value in variable loading conditions. Also, we proved the advanced response time and stability through the simulation and experiment by applying additional current signal to the control algorithm.