Owing to increase of meteorological disasters by climate change, it needs to study of climate change which will be able to deal with adaption for basic local authorities. A case study area of Yesan have been impacted by land-use which alter natural environment demage. It has led to micro-climate change impacts in rural area, Yesan. In order to adapt to the effects, this paper estimated temperature change in productivity of fruits and conducted decline of nonpoint pollutant loadings. As the results of temperature change of effecting on growth of apple, since a rise in temperature have not increased high, therefore the apple productivity could not be influence until 2030s. While the apple productivity could be declined 14.8% in 2060s. In addition, it supposes that the productivity would be decreased 44.5% in 2090s. Furthermore, it showed that the apple maturity has become worse, because length of high temperature has dramatic increased 54.2% in 2030s, 103.2% in 2060s and 154.0% in 2060s beside 2000, respectively, compared with 2000. As results of analysing between the future rainfall characteristics and nonpoint pollutant loadings, the subject of reduction of nonpoint pollutant was efficiency when it implemented around Oga-myeon or Deoksan-myeon Dun-ri. This study classified the region more detail each Eup and Myeon after that it analysed the rural region impacts of climate change for basic local authorities. Hence, this study is able to predict adaptation of rural region impacts of climate change. Due to increase of green house gases emission, meteorological disasters could often occur in the future. Therefore, it needs follow-up studies that assess climate change of effecting on rural region.