Recently, climate change causes climatic anomaly such as global warming, the typhoon and severe rain storm etc. and it brings damage frequently. Climate change and global warming are prevalent all over the world in this century and many researchers including hydrologists have studied on the climate change. In this study, Seonakdong river watershed in the Nakdong river basin was selected as a study area. Real-time monitoring system was used to draw the rating curves, which has 0.78 to 0.96 of $R^2$. To predict runoff change in Seonakdong river watershed caused by climate change, the change in hydrologic runoff were predicted using the watershed model, SWAT. As a result, the runoff from the Seonakdong river watershed was increased by up to 45 % in summer. Because of the non-point sources from the farmland and the urban area, the water quality will be affected by the climate change. In this study, the operating plan of the water gates in Seonakdong river will be suggested by considering the characteristics of the watershed runoff due to the climate change. The optimal watergate opening plan will solve the water pollution problems in the reservoir-like river.