This paper presents a method that generates alternatives of spatial arrangement for naval ships with limited information. To attain this end, GA (General Arrangement) methodology and GA reports of existing naval ships are analyzed. In order to improve the current naval ship spatial arrangement method that relies on the experience and know-hows of designers, we propose a systematic spatial arrangement process using SLP (Systematic Layout Planning), which determines relative positions of the components by analyzing relationships among them. The proposed method, along with the GA process, is applied to a virtual naval ship and layout alternatives are generated to verify usefulness of the method.